AI biomedical research console | GEO/DEG live

Decode Biology at Scale

Query PubMed, KEGG and multi-dataset evidence through a secure AI analysis layer for biomarkers, pathways, drug targets and literature intelligence.

POST api.jsomics.com/v1/research
Research modalities

Biomarkers

Gene, protein and molecular marker prioritisation with confidence scoring.

Literature

Evidence synthesis from abstracts, relationships, citations and source links.

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GEO DEG Analysis

Upload or fetch GEO mRNA-seq datasets. Automatic data-type detection selects the correct statistical method - DESeq2 for raw counts, limma for normalised data.

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QC and Validation

Automatic QC checks - sample count, missing values, PCA separation, library size variation - before every analysis with transparent warnings.

Live
PubMed fetch
4+
Modalities
5
Agents
Live
Cache speed

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Evidence records
0

PubMed 0 - KEGG 0

Plan
free
$ jsomics query --multiomics
BRCA1 breast cancer biomarkers EGFR lung cancer drug targets TP53 tumour suppressor mechanisms Alzheimer neurodegeneration genes
Ready · one-go PubMed / KEGG / GPT-Claude synthesis
Parsing PubMed abstracts...
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AI insight
No insight yet.
How to use GEO DEG Analysis

1. Search by disease keyword (e.g. "breast cancer") to find GEO datasets, or enter a GEO accession directly (e.g. GSE12345).
2. Click Fetch samples to load sample metadata and auto-detect case/control groups.
3. Review and adjust the case/control sample assignments if needed.
4. Click Run DEG + AI to perform differential expression analysis cross-referenced with PubMed literature and interpreted by AI.

GEO mRNA-seq DEG

Ready for GEO accession.
Stage 1: Fetching GEO matrix from NCBI...

Dataset

Search GEO or enter an accession, then fetch samples.

Query History

Recent backend and local queries appear here.

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